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Additional file 2: of Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
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Additional file 2: of Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Joshua Earl, Nithin Adappa, Jaroslaw Krol, Archana Bhat, Sergey Balashov, Rachel Ehrlich, James Palmer, Alan Workman, Mariel Blasetti, Bhaswati Sen, …
24 Oct 2018
DOI: https://doi.org/10.6084/m9.figshare.7245797
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Abstract

Biological Sciences not elsewhere classified Chemical Sciences not elsewhere classified Ecology Evolutionary Biology FOS: Biological sciences FOS: Chemical sciences FOS: Health sciences FOS: Mathematics Genetics Infectious Diseases Inorganic Chemistry Mathematical Sciences not elsewhere classified Medicine Microbiology Space Science
Table S1. Expected composition of â Evenâ DNA Mock Community from BEI. Table S2. Expected composition of DNA Mock Community from JGI-CAMI. Table S3. PCR Primers Sequence. Table S4. Filtering stats for mock communities. Table S5. FL16S Denovo OTU Counts from QIIME2 with Greengenes v13_8 Classification. Table S6. FL16S Closed OTU Counts from QIIME2 with Greengenes v13_8 Classification. Table S7. BEI v3-v5 16S Denovo OTU Counts from QIIME2 with Greengenes v13_8 Classification. Table S8. BEI v3v5 16S Closed OTU Counts from QIIME2 with Greengenes v13_8 Classification. Table S9. OTU Counts and Taxonomic Classification for BEI Mock Community Classified With Mothur v1.35. Table S10. OTU Count and Taxonomic Classification on Mock Community from Singer et al. Table S11. Error Analysis of Reads Mapping to Positive Control E.coli MG1655 Reference. Table S12. MCSMRT Classification of CAMI Mock Community. Table S13. Classification Accuracies of Cami Community for Full-Length and v3-v5 Truncated 16S. Table S14. Monophy results for multi-species genera in the CAMI community. Table S15. Sinonasal dataset with patient samples collected from sites as shown in Table 4. Table S16. Sinonasal Sample Statistics and NCBI BioSampleID. Table S17. Sinonasal OUT Taxonomic Classification and Confidence. Table S18. Read counts mapping to each OTU centroid for all sinonasal samples. (XLSX 443 kb)

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