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Interferon Alpha Induces Multiple Cellular Proteins That Coordinately Suppress Hepadnaviral Covalently Closed Circular DNA Transcription
Journal article   Open access   Peer reviewed

Interferon Alpha Induces Multiple Cellular Proteins That Coordinately Suppress Hepadnaviral Covalently Closed Circular DNA Transcription

Junjun Cheng, Qiong Zhao, Yan Zhou, Liudi Tang, Muhammad Sheraz, Jinhong Chang and Ju-Tao Guo
Journal of virology, v 94(17)
17 Aug 2020
PMID: 32581092
url
https://doi.org/10.1128/jvi.00442-20View
Published, Version of Record (VoR) Open

Abstract

Animals Antiviral Agents - metabolism Antiviral Agents - pharmacology Cell Line Chickens Chromosomal Proteins, Non-Histone - chemistry Chromosomal Proteins, Non-Histone - metabolism DNA, Circular - metabolism DNA, Viral - genetics Epigenesis, Genetic Hepadnaviridae - drug effects Hepadnaviridae - genetics Hepadnaviridae Infections - virology Hepatitis B virus Hepatitis B Virus, Duck - drug effects Hepatitis B, Chronic - virology Hepatocytes - virology Histone Code Histones - metabolism Humans Interferon-alpha - genetics Interferon-alpha - metabolism Interferon-alpha - pharmacology Promyelocytic Leukemia Protein - metabolism Protein Processing, Post-Translational RNA, Viral STAT1 Transcription Factor - metabolism Transcription, Genetic Virus Replication
Covalently closed circular DNA (cccDNA) of hepadnaviruses exists as an episomal minichromosome in the nucleus of an infected hepatocyte and serves as the template for the transcription of viral mRNAs. It had been demonstrated by others and us that interferon alpha (IFN-α) treatment of hepatocytes induced a prolonged suppression of human and duck hepatitis B virus cccDNA transcription, which is associated with the reduction of cccDNA-associated histone modifications specifying active transcription (H3K9 or H3K27 ), but not the histone modifications marking constitutive (H3K9 ) or facultative (H3K27 ) heterochromatin formation. In our efforts to identify IFN-induced cellular proteins that mediate the suppression of cccDNA transcription by the cytokine, we found that downregulating the expression of signal transducer and activator of transcription 1 (STAT1), structural maintenance of chromosomes flexible hinge domain containing 1 (SMCHD1), or promyelocytic leukemia (PML) protein increased basal level of cccDNA transcription activity and partially attenuated IFN-α suppression of cccDNA transcription. In contrast, ectopic expression of STAT1, SMCHD1, or PML significantly reduced cccDNA transcription activity. SMCHD1 is a noncanonical SMC family protein and implicated in epigenetic silencing of gene expression. PML is a component of nuclear domain 10 (ND10) and is involved in suppressing the replication of many DNA viruses. Mechanistic analyses demonstrated that STAT1, SMCHD1, and PML were recruited to cccDNA minichromosomes and phenocopied the IFN-α-induced posttranslational modifications of cccDNA-associated histones. We thus conclude that STAT1, SMCHD1, and PML may partly mediate the suppressive effect of IFN-α on hepadnaviral cccDNA transcription. Pegylated IFN-α is the only therapeutic regimen that can induce a functional cure of chronic hepatitis B in a small, but significant, fraction of treated patients. Understanding the mechanisms underlying the antiviral functions of IFN-α in hepadnaviral infection may reveal molecular targets for development of novel antiviral agents to improve the therapeutic efficacy of IFN-α. By a loss-of-function genetic screening of individual IFN-stimulated genes (ISGs) on hepadnaviral mRNAs transcribed from cccDNA, we found that downregulating the expression of STAT1, SMCHD1, or PML significantly increased the level of viral RNAs without altering the level of cccDNA. Mechanistic analyses indicated that those cellular proteins are recruited to cccDNA minichromosomes and induce the posttranslational modifications of cccDNA-associated histones similar to those induced by IFN-α treatment. We have thus identified three IFN-α-induced cellular proteins that suppress cccDNA transcription and may partly mediate IFN-α silencing of hepadnaviral cccDNA transcription.

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Virology
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