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Modeling between-population variation in COVID-19 dynamics in Hubei, Lombardy, and New York City
Journal article   Open access

Modeling between-population variation in COVID-19 dynamics in Hubei, Lombardy, and New York City

Bryan Wilder, Marie Charpignon, Jackson A Killian, Han-Ching Ou, Aditya Mate, Shahin Jabbari, Andrew Perrault, Angel N Desai, Milind Tambe and Maimuna S Majumder
Proceedings of the National Academy of Sciences - PNAS, v 117(41), pp 25904-25910
13 Oct 2020
PMID: 32973089
url
https://doi.org/10.1073/pnas.2010651117View
Published, Version of Record (VoR) Open CC BY V4.0

Abstract

Betacoronavirus - physiology China - epidemiology Communicable Disease Control - legislation & jurisprudence Communicable Disease Control - methods Coronavirus Infections - epidemiology Coronavirus Infections - pathology Coronavirus Infections - prevention & control Coronavirus Infections - transmission COVID-19 Humans Italy - epidemiology Models, Statistical New York City - epidemiology Pandemics - prevention & control Pneumonia, Viral - epidemiology Pneumonia, Viral - pathology Pneumonia, Viral - prevention & control Pneumonia, Viral - transmission SARS-CoV-2
As the COVID-19 pandemic continues, formulating targeted policy interventions that are informed by differential severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission dynamics will be of vital importance to national and regional governments. We develop an individual-level model for SARS-CoV-2 transmission that accounts for location-dependent distributions of age, household structure, and comorbidities. We use these distributions together with age-stratified contact matrices to instantiate specific models for Hubei, China; Lombardy, Italy; and New York City, United States. Using data on reported deaths to obtain a posterior distribution over unknown parameters, we infer differences in the progression of the epidemic in the three locations. We also examine the role of transmission due to particular age groups on total infections and deaths. The effect of limiting contacts by a particular age group varies by location, indicating that strategies to reduce transmission should be tailored based on population-specific demography and social structure. These findings highlight the role of between-population variation in formulating policy interventions. Across the three populations, though, we find that targeted "salutary sheltering" by 50% of a single age group may substantially curtail transmission when combined with the adoption of physical distancing measures by the rest of the population.

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Collaboration types
Domestic collaboration
Web of Science research areas
Infectious Diseases
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