Journal article
Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through Transcriptome Analysis of Mungbean
Journal of integrative plant biology, v 53(1), pp 63-73
01 Jan 2011
PMID: 21205180
Featured in Collection : UN Sustainable Development Goals @ Drexel
Abstract
Mungbean (Vigna radiata (L.) Wilczek) is a unique species in its ability to fix atmospheric nitrogen, with early maturity, and relatively good drought resistance. We used 454 sequencing technology for transcriptome sequencing. A total of 150 159 and 142 993 reads produced 5 254 and 6 374 large contigs (>= 500 bp) with an average length of 833 and 853 for Sunhwa and Jangan, respectively. Functional annotation to known sequences yielded 41.34% and 41.74% unigenes for Jangan and Sunhwa. A higher number of simple sequence repeat (SSR) motifs was identified in Jangan (1 630) compared with that of Sunhwa (1 334). A similar SSR distribution pattern was observed in both varieties. A total of 8 249 single nucleotide polymorphisms (SNPs) and indels with 2 098 high-confidence candidates were identified in the two mungbean varieties. The average distance between individual SNPs was similar to 860 bp. Our report demonstrates the utility of transcriptomic data for implementing a functional annotation and development of genetic markers. We also provide large resource sequence data for mungbean improvement programs.
Metrics
Details
- Title
- Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through Transcriptome Analysis of Mungbean
- Creators
- Kyaw Thu Moe - Kongju National UniversityJong-Wook Chung - Kongju National UniversityYoung-Il Cho - Kongju National UniversityJung-Kyung Moon - Rural Development AdministrationJa-Hwan Ku - Rural Development AdministrationJin-Kyo Jung - RDA (United States)Jungran Lee - Rural Development AdministrationYong-Jin Park - Kongju National University
- Publication Details
- Journal of integrative plant biology, v 53(1), pp 63-73
- Publisher
- Wiley
- Number of pages
- 11
- Grant note
- 200908FHT020609001 / Rural Development Administration (RDA), Republic of Korea; Rural Development Administration (RDA)
- Resource Type
- Journal article
- Language
- English
- Academic Unit
- Mechanical Engineering and Mechanics
- Web of Science ID
- WOS:000285923700008
- Scopus ID
- 2-s2.0-78650881858
- Other Identifier
- 991020547607904721
UN Sustainable Development Goals (SDGs)
This publication has contributed to the advancement of the following goals:
InCites Highlights
Data related to this publication, from InCites Benchmarking & Analytics tool:
- Collaboration types
- Domestic collaboration
- Web of Science research areas
- Biochemistry & Molecular Biology
- Plant Sciences