VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Inimary T. Toby; Mikhail K. Levin; Edward A. Salinas; Scott Christley; Sanchita Bhattacharya; Felix Breden; Adam Buntzman; Brian Corrie; John Fonner; Namita T. Gupta; Uri Hershberg; Nishanth Marthandan; Aaron Rosenfeld; William Rounds; Florian Rubelt; Walter Scarborough; Jamie K. Scott; Mohamed Uduman; Jason A. Vander Heiden; Richard H. Scheuermann; Nancy Monson; Steven H. Kleinstein; Lindsay G. Cowell

doi:10.1186/s12859-016-1214-3

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VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Journal article

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VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Inimary T. Toby, Mikhail K. Levin, Edward A. Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John Fonner, Namita T. Gupta, …

BMC bioinformatics, v 17(Suppl 13), pp 333-333

06 Oct 2016

DOI: https://doi.org/10.1186/s12859-016-1214-3

PMID: 27766961

Featured in Collection : UN Sustainable Development Goals @ Drexel

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Abstract

Antigen receptor repertoire

C++

Data sharing

Data standards

Immune repertoire

Proceedings

Python

Repertoire profiling

XML

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9 citations in Web of Science

10 citations in Scopus

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Title: VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements
Creators: Inimary T. Toby - Southwestern Medical Center
Mikhail K. Levin - Bank of America
Edward A. Salinas - Broad Institute
Scott Christley - Southwestern Medical Center
Sanchita Bhattacharya - University of California, San Francisco
Felix Breden - Simon Fraser University
Adam Buntzman - University of Arizona
Brian Corrie - New Zealand eScience Infrastructure
John Fonner - Texas Advanced Computing Center, Research Office Complex 1.101, J.J. Pickle Research Campus, Austin, USA
Namita T. Gupta - Yale University
Uri Hershberg - Drexel University
Nishanth Marthandan - Simon Fraser University
Aaron Rosenfeld - Drexel University
William Rounds - Southwestern Medical Center
Florian Rubelt - Stanford University
Walter Scarborough - Texas Advanced Computing Center, Research Office Complex 1.101, J.J. Pickle Research Campus, Austin, USA
Jamie K. Scott - Simon Fraser University
Mohamed Uduman - Yale University
Jason A. Vander Heiden - Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, 300 George Street, Suite 505, New Haven, CT 06511 USA
Richard H. Scheuermann - University of California, San Diego
Nancy Monson - Southwestern Medical Center
Steven H. Kleinstein - Yale University
Lindsay G. Cowell - Southwestern Medical Center
Publication Details: BMC bioinformatics, v 17(Suppl 13), pp 333-333
Publisher: BioMed Central
Resource Type: Journal article
Language: English
Academic Unit: School of Biomedical Engineering, Science, and Health Systems
Web of Science ID: WOS:000402048800001
Scopus ID: 2-s2.0-84990817455
Other Identifier: 991019167580504721

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Collaboration types: Industry collaboration; Domestic collaboration; International collaboration
Web of Science research areas: Biochemical Research Methods; Biotechnology & Applied Microbiology; Mathematical & Computational Biology

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

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UN Sustainable Development Goals (SDGs)

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