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Preprint
RadGenNets: Deep Learning-Based Radiogenomics Model For Gene Mutation Prediction In Lung Cancer
bioArxiv
18 Apr 2022
Abstract
In this paper, we present our methodology that can be used for predicting gene mutation in patients with non-small cell lung cancer (NSCLC). There are three major types of gene mutations that a NSCLC patient’s gene structure can change to: epidermal growth factor receptor (EGFR), Kirsten rat sarcoma virus (KRAS), and Anaplastic lymphoma kinase (ALK). We worked with the clinical and genomics data for each patient as well CT scans. We preprocessed all of the data and then built a novel pipeline to integrate both the image and tabular data. We built a novel pipeline that used a fusion of Convolutional Neural Networks and Dense Neural Networks. Also, using a search approach, we pick an ensemble of deep learning models to classify the separate gene mutations. These models include EfficientNets, SENet, and ResNeXt WSL, among others. Our model achieved a high area under curve (AUC) score of 94% in detecting gene mutation.
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Details
- Title
- RadGenNets: Deep Learning-Based Radiogenomics Model For Gene Mutation Prediction In Lung Cancer
- Creators
- Satvik Tripathi - Drexel UniversityEthan Jacob MoyerAlisha Isabelle Augustin - Drexel UniversityAlex ZavalnySuhani Dheer - Drexel UniversityRithvik Sukumaran - Drexel UniversityDaniel Ethan SchwartzBrandon GorskiFarouk Dako - University of PennsylvaniaEdward Kim - Drexel University, Computer Science
- Publication Details
- bioArxiv
- Resource Type
- Preprint
- Academic Unit
- College of Arts and Sciences; Computer Science; College of Computing and Informatics
- Other Identifier
- 991022064041604721